Simply Applesauce Muffins

You’ll love these simple applesauce muffins because not only are they incredibly quick and easy, they’re deliciously moist, flavorful, and satisfying. Packed with wholesome ingredients like whole wheat flour, oats, and applesauce, these healthful muffins are naturally free from refined sugar and contain no dairy if using non dairy milk. There’s no mixer required and you can play around with the add-ins for varying flavors and textures. Enjoy!

One reader, Anne, commented:This is my go-to muffin recipe. Moist, delicious, and so easy. I put dried tart cherries in place of raisins and sometimes chocolate chips when I make them for my granddaughters. They are a family favorite. They freeze really well, too. Thanks for yet another amazing recipe! ★★★★★

healthy whole wheat applesauce muffins

When I’m looking to bake something quick, easy, and wholesome—I always rely on muffins. Banana muffins, bran muffins, or these apple cinnamon oatmeal cups are my top choices because they’re simple, relatively healthy, and adult + child approved. Preparing muffin batter is a no-fuss task and you can enjoy muffins right away, which is definitely a bonus when baking for or with kids. (By the way, here are many kid-friendly baking recipes.)

These applesauce muffins join my top favorites and I know you’ll love them too!


Why You Will Love These Applesauce Muffins:

  • Recipe is quick & easy
  • Muffins are satisfying, soft, & moist
  • No mixer required
  • Use convenient, ordinary ingredients
  • Healthful & wholesome just like these healthy apple muffins
  • No refined sugar
  • Dairy free if using a dairy free milk
  • Optional add-ins for texture and flavor (raisins, nuts, chopped apples)

By the way, if you’re looking for a more indulgent apple muffin, try these apple cinnamon muffins.

whole wheat applesauce muffins with oats on top

Recipe Testing Whole Wheat Applesauce Muffins

Well well well. What ended up as a fairly easy muffin recipe began as complicated mess of sticky flavorless muffins. I started testing this applesauce muffin recipe using the base of my blueberry oatmeal muffins. Adding applesauce did the batter no favors and the entire muffin tasted bland and gloppy (technical terms). I adore that recipe and now know that it’s best to leave it alone.

So I turned to my whole wheat banana walnut muffins as a starting point. The batter includes oats as an add-in, so it’s less of an oatmeal muffin and more of a standard muffin with some oats in it—if that makes sense. I swapped applesauce for the mashed banana, added more oats, and slightly reduced the baking soda. (1 full teaspoon is simply not needed.) As it turns out, I think I prefer these applesauce muffins because I don’t always have brown & spotty bananas on hand. Convenience is key!


Key Ingredients in These Whole Wheat Applesauce Muffins

  1. Applesauce: Use unsweetened applesauce. If all you have is sweetened, that’s completely fine, just be sure to slightly reduce the maple syrup in the recipe. See recipe note below.
  2. Melted Coconut Oil: Without some fat, these muffins taste dry and rubbery. I love using melted coconut oil like we do in these healthier chocolate banana muffins, but vegetable oil or melted butter works too.
  3. Maple Syrup: The applesauce muffins aren’t overly sweet because using too much sugar takes away from the applesauce flavor. Maple syrup replaces refined sugar and pairs wonderfully with the applesauce.
  4. Whole Wheat Flour: These are 100% whole wheat muffins made with all whole wheat flour. If needed, you can switch out with all-purpose or white whole wheat flour. Or, use a mix of whole wheat flour and all-purpose flour like I do for peanut butter banana muffins. I have not tested this recipe with any gluten free flour alternatives. If you have leftover whole wheat flour from making English muffins, this is the perfect place to use it!
  5. Oats: Use whole oats or quick oats in this recipe and there’s no need to soak them prior to using in the batter like we do with blueberry oatmeal muffins.
  6. Add-Ins: Like zucchini muffins, today’s thick muffin batter welcomes add-ins such as raisins, chocolate chips, dried cranberries, or chopped nuts. Based on sweetness of the add-in, it’s best to use either 3/4 or 1 cup as detailed in the notes below. You could also use 1 and 1/2 cups of chopped apples (about 2 medium). We love them with raisins because they remind us of bran raisin muffins which are made with wheat bran—an ingredient I don’t usually have on hand.

You also need cinnamon, baking powder & baking soda, salt, eggs, milk, and vanilla extract. Before baking, you can sprinkle the tops of the muffins with oats and/or coconut sugar or coarse sugar for a little crunch. I like adding it to pumpkin muffins, too.

(Note in the photo below the melted coconut oil looks like ice water since not all of the oil had been melted—I melted it more after taking this photo.)

applesauce and other muffin ingredients shown in bowls

Best Applesauce To Use

The best applesauce to use for baking is typically unsweetened. In this recipe, you can use homemade or store-bought and the consistency doesn’t make a difference—thick, thin, smooth, or chunky. Applesauce with cinnamon is also a great choice, but if you don’t want too much cinnamon flavor, I would slightly reduce the cinnamon in the recipe.

My best advice is to use whatever applesauce you enjoy eating!


Imperative Success Tip: Make sure you grease the muffin liners before adding the batter or skip the liners and grease the 12-count muffin pan. This batter sticks to the liners, but greasing helps. After the muffins cool completely, they do not stick as much.

applesauce muffin batter in glass bowl and in muffin pan
whole wheat applesauce muffins in muffin pan
whole wheat applesauce muffins with raisins

The muffins above look like they have chocolate chips, don’t they? Chocolate chip lovers will be disappointed to learn those are raisins. HA! (Oh-so-good with raisins!)


Can I Add Apples?

Yes, apples are a wonderful choice as the add-in. See recipe note below.

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whole wheat applesauce muffins with oats on top

Applesauce Muffins

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.8 from 84 reviews
  • Author: Sally
  • Prep Time: 15 minutes
  • Cook Time: 21 minutes
  • Total Time: 40 minutes
  • Yield: 12 muffins
  • Category: Muffins
  • Method: Baking
  • Cuisine: American
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Description

These moist and flavorful whole wheat applesauce muffins come together with a handful of healthful and wholesome ingredients. See notes if you wish to replace the raisins.


Ingredients

  • 2 cups (260gwhole wheat flour (spooned & leveled)
  • 2/3 cup (57g) old-fashioned whole rolled oats
  • 1 teaspoon ground cinnamon
  • 3/4 teaspoon baking soda
  • 1 teaspoon baking powder
  • 1/2 teaspoon salt
  • 1 and 1/3 cups (320g) unsweetened applesauce, at room temperature*
  • 2 large eggs, at room temperature
  • 1/3 cup (70g) coconut oil, melted (or vegetable oil or melted butter)
  • 1/3 cup (80ml) pure maple syrup, at room temperature
  • 1/3 cup (80ml) milk (dairy or nondairy), at room temperature
  • 1 teaspoon pure vanilla extract
  • 3/4 cup (110g) raisins*
  • optional: 3 Tablespoons oats and/or 1 Tablespoon coarse sugar for sprinkling


Instructions

  1. Preheat oven to 425°F (218°C). Spray a 12-count muffin pan with nonstick spray or use cupcake liners. If using cupcake liners, spray the liners because when warm, these muffins stick.
  2. Whisk the flour, oats, cinnamon, baking soda, baking powder, and salt together in a large bowl until combined. Set aside. In a medium bowl, whisk the applesauce, eggs, oil, maple syrup, milk, and vanilla together until combined. Pour the wet ingredients into the dry ingredients, stir a few times, then add the raisins. Fold everything together gently just until combined and no flour pockets remain.
  3. Spoon the batter into liners, filling them all the way to the top. Top with oats and a light sprinkle of coarse sugar, if desired. Bake for 5 minutes at 425 then, keeping the muffins in the oven, reduce the oven temperature to 350°F (177°C). Bake for an additional 15-16 minutes or until a toothpick inserted in the center comes out clean. The total time these muffins take in the oven is about 20-21 minutes, give or take. (For mini muffins, bake 11-13 minutes at 350°F (177°C) the whole time.)
  4. Allow the muffins to cool for 5 minutes in the muffin pan, and then transfer to a wire rack to continue cooling or enjoy warm.
  5. Muffins stay fresh covered at room temperature for a few days, then transfer to the refrigerator for up to 1 week.

Notes

  1. Freezing Instructions: For longer storage, freeze the muffins for up to 3 months. Thaw overnight in the refrigerator, then heat up in the microwave if desired.
  2. Special Tools (affiliate links): 12-count Muffin Pan | Muffin Liners | Glass Mixing Bowls | Whisk | Cooling Rack
  3. Oats: This recipe uses whole rolled oats, but you can use the same amount of quick oats if needed. You can also skip the oats if desired, but I recommend adding a little more flour to help soak up some liquid, such as 3 Tablespoons (about 24g).
  4. Applesauce: It’s best to use unsweetened applesauce. If using sweetened, slightly reduce the maple syrup down to 1/4 cup (60ml). You can use homemade or store-bought applesauce and the consistency doesn’t make a difference– use thick, thin, smooth, or chunky. Applesauce with cinnamon is also a great choice, but if you don’t want too much cinnamon flavor, I would slightly reduce the cinnamon in the recipe.
  5. Maple Syrup: You can use honey for the maple syrup, but the flavor will be different.
  6. Raisins/Add-Ins: Feel free to leave the muffins plain, but they’re excellent with add-ins such as raisins, 3/4 cup (about 110g) dried cranberries, 1 cup (about 120g) chopped walnuts or pecans, 1 and 1/2 cups (165g) peeled & chopped apples (about 2 medium apples such as Granny Smith, Honeycrisp, Gala, Pink Lady), or 3/4 cup (about 135g) chocolate chips.
  7. Initial High Temperature: The hot burst of air will spring up the top of the muffin quickly, then the inside of the muffin can bake for the remainder of the time. This helps the muffins rise nice and tall.
  8. Room Temperature Ingredients: It’s best if any cold ingredients are brought to room temperature before starting. The coconut oil will slightly solidify if other ingredients are too cold and you may notice greasy oily pockets in the baked muffins.
  9. Nutrition Information: Using VeryWellFit calculator and calculated using coconut oil, unsweetened almond milk, and raisins, these muffins come out to 181 calories, 7.2g fat, 27g carbs, 3.3g fiber, 9g sugar, and 4g protein each.
sally mckenney headshot purple shirt.
About the Author

Sally McKenney

Sally McKenney is a baker, food photographer, and New York Times best-selling author. Her kitchen-tested recipes and step-by-step tutorials have given millions of readers the knowledge and confidence to bake from scratch. Sally’s work has been featured on TODAY, Good Morning America, Taste of Home, People, and more.

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Reader Comments and Reviews

  1. Brittanie says:
    November 18, 2025

    I used pumpkin instead of applesauce and they are delicious!

    Reply
  2. Pat says:
    November 16, 2025

    Hi, I have not made these yet, can I leave out the maple syrup?

    Reply
  3. Savannah says:
    October 20, 2025

    Love that these have no sugar- other than the maple syrup. They raisins were definitely a great addition! Super simple, came out perfect and dont feel terrible about eating them!

    Reply
  4. Julie says:
    October 5, 2025

    I don’t think I’ve ever left a review for a recipe, but I love this. Not too sweet, lots of healthy ingredients, but still a lovely taste. I’m looking forward to trying different ingredient combinations too. Thank you!

    Reply
  5. Alexa W says:
    September 23, 2025

    A great recipe my kids love. I used flax eggs. The raisins are a must.

    Reply
  6. Emily says:
    May 12, 2025

    I made these for my baby! I left out the maple syrup and added in an extra 1/3 cup Applesauce instead. Theyre perfect for her since I’m trying to avoid added sugars but the apple is ok!

    Reply
  7. Fran Mitchell Rondeau says:
    March 26, 2025

    is it possible to turn this into a buttered loaf pan as opposed to muffins?

    Reply
    1. Trina @ Sally's Baking says:
      March 26, 2025

      Hi Fran, You can certainly try this muffin batter in a loaf pan. We’re unsure of the exact bake time, but you can use the timing from this apple cinnamon bread as a guide. Enjoy!

      Reply
  8. Katie M says:
    March 20, 2025

    I’ve made these muffins twice: the first time as written with fresh-milled flour, the second time with buttermilk and chocolate chips. I wouldn’t have called them “bland” before BUT the chocolate chips definitely make them sweeter. I used buttermilk cause it’s all I had on hand. These muffins are delicious, and my children agree!

    Reply
  9. Pam Lebow says:
    March 7, 2025

    I love this recipe and so does my husband! I was wondering if you knew the calories per muffin? Thanks. Love your recipes and recommend it to others.

    Reply
    1. Beth @ Sally's Baking says:
      March 8, 2025

      Hi Pam, we don’t usually include nutrition information as it can vary between different brands of the same ingredients. Plus, many recipes have ingredient substitutions or optional ingredients listed. However, there are many handy online calculators where you can plug in and customize your exact ingredients/brands. Readers have found this one especially helpful: https://www.verywellfit.com/recipe-nutrition-analyzer-4157076

      Reply
  10. Dara says:
    March 2, 2025

    ok but very bland

    Reply
  11. Deborah Gambs says:
    February 11, 2025

    My 4 yr old son and I made these together. I am new to Sally’s Baking Addiction and find the explanation for baking to be excellent. I am a reluctant baker because of the precision required but it’s been a long cold winter so this is a fun indoor activity he enjoys. We had great success with the pumpkin bread which we made twice.

    We made some substitutions — canola oil (coconut allergy), King Arthur 1-for-1 Gluten Free flour, no raisins because we didn’t have them. Cinnamon apple sauce so used 3/4 tsp cinnamon, added 3/4 tsp ginger spice.

    The batter was very wet so I let them sit for 15 minutes before we put them in the oven, I was concerned it was the GF flour and also thought it would help the oats absorb the liquid.

    The finished product did not brown as much as I would have liked, the pumpkin bread got a nice crispy top. The texture of the muffins inside is GREAT. They are fairly fluffy, not exactly moist but not dry either. They are a nice portion size and the amount of batter was exact for 12 muffins. My 4 year old really likes them and he’s particular.

    The flavor is EXTREMELY mild. Someone else called them bland. I think if we’d had the raisins the flavor would be improved but I think I’d chop them so they’d spread out more. I wondered how I could make these a bit more moist on the inside and crunchy on the outside. Maybe keeping them at a higher temp for longer and cooking them for less time? I also wondered what could give a stronger flavor – applesauce is of course very mild.

    I’m looking forward to trying more recipes here.

    Reply
    1. Lexi @ Sally's Baking says:
      February 11, 2025

      Hi Deborah, we’re so glad you enjoyed the muffins! Were they over baked by chance? We wouldn’t increase the bake time if the insides were less moist than you’d like. Adding the optional coarse sugar will increase the crunchiness on the tops. As for flavor, raisins or other add-ins will elevate the flavor. You can also increase the cinnamon and/or play around with adding more warm spices like nutmeg, cardamom, ginger, allspice, etc.

      Reply
    2. Donna says:
      April 24, 2025

      Hi. I made them with my granddaughter—well actually, she made them herself. This was especially interesting, as we used applesauce she made after picking apples in the fall. Next time, we are going to try the GF flour substitute and I’m thinking a fresh, diced apple would add moisture.

      Reply
  12. Vicci says:
    February 3, 2025

    Very good, nice and moist but needed just a touch more sweetener. Next time I will add 1/4 cup of brown sugar and see what that does!

    Reply
  13. Lynn Smith says:
    January 17, 2025

    I normally love all things from Sally’s Baking Addiction, but this one is not a winner for me. In all reality, the texture is great, the muffins look amazing. . . . but (IMO) they’re bland and tasteless.

    Reply
  14. Margie Sherman says:
    January 14, 2025

    Hi Sally…my question is , Can your muffin recipe’s be fit in a loaf pan instead of muffin pans ??
    I love all of your recipes and the extra information at the end. Thank you so much for making baking so easy !

    Reply
    1. Erin @ Sally's Baking says:
      January 15, 2025

      Hi Margie, thank you so much for trusting our recipes! You can certainly try this muffin batter in a loaf pan. We’re unsure of the exact bake time, but you can use the timing from this apple cinnamon bread as a guide. Enjoy!

      Reply
  15. Mélanie says:
    January 11, 2025

    These muffins are delicious. I used apple-pear-sauce because that’s what I had. I also added part raisins, part walnuts, instead of 100% raisins. YUM! I will be making this recipe again and will try different applesauces/dried fruits/nuts for different flavors.

    Reply
  16. Kay says:
    January 6, 2025

    Would it work to sub ground oat flour for the rolled/quick oatmeal? I like the extra fiber that oats add, but do not care for the texture of whole oatmeal in my baked goods.

    Reply
    1. Trina @ Sally's Baking says:
      January 7, 2025

      Hi Kay! We haven’t tested oat flour here, but another reader has reported success doing so. Let us know if you give it a try.

      Reply
  17. Michelle says:
    January 5, 2025

    My husband and I really enjoyed these, my 3yo also gobbled them up. Can’t wait to try different add-ins, love the base flavour. More than enough flavour if recipe followed

    Reply
  18. Maryann says:
    November 3, 2024

    Really good muffins!

    Reply
  19. Paulina says:
    October 9, 2024

    These muffins have absolutely no flavor – don’t be fooled by the good reviews. Just find a different recipe.

    Reply
    1. Sally @ Sally's Baking says:
      October 10, 2024

      Hi Paulina, thank you for the feedback. With so much applesauce, cinnamon, and maple syrup, I’m trying to determine how your batch would be flavorless. Did you alter the recipe at all? I worked extensively to ensure these muffins had a good dose of flavor, but still remained on the healthier side.

      Reply
    2. Alyssa says:
      December 9, 2024

      This is a strange review. I’ve made these muffins countless times and they’re plenty flavorful if you follow the recipe 🙂
      Thanks for another great one, Sally!

      Reply
  20. Anne says:
    October 7, 2024

    I was worried these might be dry because of whole wheat and oats, but they turned out fantastic — moist and springy. They have been keeping well in the fridge. I did end up using half whole wheat & buckwheat flour and half regular AP flour. I also substituted honey for maple syrup and almond oil for coconut oil. The batter was on the wet side and I made sure to minimize mixing to avoid gluten development. Also baked them as mini-muffins in my toaster oven 375 degrees 13-14 min. Next time I will give it try with 100% whole grain flours 🙂

    Reply
  21. Anne Berend says:
    October 4, 2024

    This is my go to muffin recipe. Moist, delicious and so easy. I put dried tart cherries in place of raisins and sometimes chocolate chips when I make them for my granddaughters. They are a family favourite. They freeze really well too. Thanks for yet another amazing recipe!

    Reply
  22. Seagoinya says:
    September 30, 2024

    I bake these muffins every week baking them right in the muffin tin without paper. They turn out perfect no matter what add-ins are used. Chocolate chips, raisins or cranberries they are all great. We are now addicted.

    Reply
  23. Lisa G says:
    September 26, 2024

    I added a couple of tablespoons of coconut palm sugar in addition to the syrup and subbed cranberries for raisins, but these are so good! All my kids and even my hubby loved them! This is a definite new favorite around here!

    Reply
  24. KD says:
    September 8, 2024

    Really delicious muffins, super moist and the perfect fall treat/breakfast.
    They also taste great if you swap the apple sauce for prune puree (I did this once to help my toddler), they came out amazing even with the change

    Reply
  25. Ray says:
    June 5, 2024

    I was blown away by these muffins! They are flavor packed, very moist, and have incredible texture. You would never guess this is a healthier recipe! I left them without any add-ins. Texture and flavor were even better the second day!!

    Reply
  26. Dondi says:
    May 29, 2024

    My mom has a severe digestive ailment and these are among the very few foods she can enjoy. I subbed oat flour the second time I made them at her request and she and several of her friends absolutely loved them. She’s been having a really hard time since her dx finding out what foods she can eat and which she can’t, and these are among the very few foods she can enjoy without fail. Thank you for this lovely recipe and its unexpected extra awesomeness. We are all very big fans out here in Northern Colorado.

    Reply